Publications

2024

33. Quillin SJ, Luo D, Gavagan A, Prindle A, Seifert HS. A New Digital Droplet PCR-Based Method to Detect 3C1 Variant Antigenic Variation Frequency in Neisseria Gonorrhoeae (in preparation).

32. Gu A, Tran P, Prindle A, Kamat N, Steinkühler, J. Remodeling of lipid-foam prototissues by network-wide tension fluctuations induced by active particles. Nature Communications (accepted in principle).

31. Kennelly C, Prindle A. Substrate identification of putative NCS1 and NCS2 nucleobase transporters in Pseudomonas aeruginosa. mBio (2024).

30. Lander S, Fisher G, Everett B, Tran P, Prindle A. Secreted nucleases reclaim extracellular DNA during biofilm development. npj Biofilms and Microbiomes (2024).

29.  Karim A, Brown D, Archuleta C, Grannan S, Aristilde L, Goyal Y, Leonard J, Mangan N, Prindle A, Rocklin G, Tyo K, Zoloth L, Jewett M, Calkins S, Kamat N, Tullman-Ercek D, Lucks J. Deconstructing synthetic biology across scales: a conceptual approach for training synthetic biologists. Nature Communications (2024).

28. Kennelly C, Tran P, Prindle A. Environmental purines decrease Pseudomonas aeruginosa biofilm formation by disrupting c-di-GMP metabolism. Cell Reports (2024).

27. Tran P, Lander S, Prindle A. Active pH regulation facilitates Bacillus subtilis biofilm development in a minimally buffered environment. mBio (2024).

23. Quillin SJ, Tran P, Prindle A. Potential Roles for Gamma-Aminobutyric Acid
Signaling in Bacterial Communities. Bioelectricity (2021).

22. Ford N, Fisher G, Prindle A, Chopp D. A Two-Dimensional Model of Potassium Signaling and Oscillatory Growth in a Biofilm. Bulletin of Mathematical Biology (2021).

21. Tran P, Prindle A. Synthetic biology in biofilms: Tools, challenges, and opportunities. Biotechnology Progress (2021).

19. Yang CY, Bialecka-Fornal M, Weatherwax C, Larkin J, Prindle A, Liu J, Garcia-Ojalvo J, Süel G. Encoding membrane-potential-based memory within a microbial community. Cell Systems (2020).

15. Liu J, Martinez-Corral R, Prindle A, Lee D, Larkin J, Gabalda-Sagarra M, Garcia-Ojalvo J, Süel G. Coupling between distant biofilms and emergence of nutrient time-sharing. Science (2017).

• Commentary: Gordon V. Coupling and sharing when life is hard. Science (2017).
• Commentary: Starling S. Communities in sync. Nature Reviews Microbiology (2017).
• Commentary: Libby EA, Dworkin J. Habits of highly effective biofilms: Ion signaling. Molecular Cell (2017).
• Commentary: Popkin G. Bacteria use brainlike bursts of electricity to communicate. Quanta Magazine (2017).

14. Humphries, J, Xiong L, Liu J, Prindle A, Yuan F, Arjes HA, Tsimring L, Süel G. Species-independent attraction to biofilms through electrical signals. Cell (2017).

• Commentary: Huang KC. Staying in touch while on the go. Cell (2017).
• Commentary: York A. Shocking biofilms. Nature Reviews Microbiology (2017).

• Commentary: Zhou S. Bacteria synchronized for drug delivery. Nature (2016).

• Commentary: Beagle SD, Lockless SW. Electrical signalling goes bacterial. Nature (2015).
• Commentary: Nunes-Alves C. Electrifying long-range signalling. Nature Reviews Microbiology (2015).
• Commentary: Chang S. An eye on bacterial communication. Physics Today (2015).

11. Liu J, Prindle A, Humphries J, Gabalda-Sagarra M, Asally M, Lee D, Ly S, Garcia-Ojalvo J, Süel G. Metabolic co-dependence gives rise to collective oscillations within biofilms. Nature (2015).

• Commentary: Tan J. Rhythm of prosperity. Cell (2015).
• Commentary: Attar N. Oscillations relieve the siege. Nature Reviews Microbiology (2015).

10. Danino T, Prindle A, Kwong G, Skalak M, Li H, Allen K, Hasty J, Bhatia SN. Programmable probiotics for detection of cancer in urine. Science Translational Medicine (2015).

• Commentary: Ray K. Programmed probiotics light up liver cancer in urine. Nature Reviews Gastroenterology & Hepatology (2015).
• Recommended by F1000

• Commentary: Solé R, Macía J. Biocircuits in synchrony. Nature (2014).
• Commentary: Burgess DJ. Cut up to bring together. Nature Reviews Genetics (2014).

7. Prindle A. Synthetic biology at all scales. Trends in Biotechnology (2013).

6. Prindle A, Stanton B. The First Annual Winter q-bio Meeting: Quantitative biology on the Hawaiian Islands. ACS Synthetic Biology (2013).

4. Prindle A, Selimkhanov J, Danino T, Samayoa P, Goldberg A, Bhatia SN, Hasty J. Genetic circuits in Salmonella typhimurium. ACS Synthetic Biology (2012).

3. Danino T, Lo J, Prindle A, Hasty J, Bhatia SN. In vivo gene expression dynamics of tumor-targeted bacteria. ACS Synthetic Biology (2012).

2. Prindle A, Samayoa P, Razinkov I, Danino T, Tsimring L, Hasty J. A sensing array of radically coupled genetic ‘biopixels’. Nature (2012).

• Commentary: Voigt CA. Bacteria collaborate to sense arsenic. Nature (2012).
• Recommended by F1000